Low Carb Keto Cheddar Sausage Stuffed Bagels Recipe
These Low Carb Keto Cheddar Sausage Stuffed Bagels are a tasty and easy baked bagel that has no grains, no nuts, no gluten and is 100% perfection!

Keto Cheddar Sausage Stuffed Bagels
These low carb keto cheddar sausage stuffed bagels are the ultimate high-protein, grain-free breakfast that’s easy to make, perfect for meal prep, and satisfying for the whole family.
Made with simple ingredients like coconut flour, mozzarella cheese, Italian sausage, and whey protein, these bagel bites are fluffy, cheesy, and incredibly filling-all while staying low in net carbs, under 2 grams. All nutritional info is at the bottom of this page.
If you’re looking for a keto snack, meal prep breakfast, or air fryer-friendly bagel alternative, this recipe is one you’ll come back to again and again.
Why These Low Carb Bagels Work
When it comes to creating recipes that actually support weight loss in midlife, it’s not just about being low carb-it’s about being high protein, satisfying, and sustainable.
These bagel bites check all the boxes:
- High protein for satiety and muscle support
- Low carb to help manage cravings and blood sugar
- Moderate fat (not overly high) for better fat loss in midlife
- Easy to prep ahead for busy weeks
This is exactly how I approach recipes now through my Midlife Macro Method-not extreme keto, but a balanced, sustainable approach that actually works.

Perfect for Meal Prep and Busy Weeks
If you’re anything like me, you want meals that you can make once and enjoy multiple times.
My life is all about getting the most bang for my buck as far as time goes in the kitchen. I want to make it once, have a lot left over, to enjoy multiple times during the week. These bagels are the perfect thing to make ahead on the weekend and store in the fridge for the week ahead.
These cheddar sausage stuffed bagels are ideal for:
- Meal prep breakfasts
- Grab-and-go snacks
- Feeding the whole family
- A quick reheat option during the week
Make a batch on the weekend, store in the fridge, and reheat when needed. They hold up beautifully and save you from decision fatigue.
Healthy, easy, make ahead, low carb, satisfying! And if you too have someone in your family with a nut allergy, this is perfect for them. If you have someone who doesn’t like coconut like my youngest son, no problem, they will never even taste it!
Ingredients for Cheddar Sausage Stuffed Bagels
- Eggs
- Sour cream
- Ground flaxseed
- Sea salt
- Baking powder
- Coconut flour
- Whey protein powder
- Shredded cheddar cheese
- Italian seasoning
- Garlic powder
- Italian sausage (casings removed, cooked and crumbled)
These ingredients create a fathead-style dough without almond flour, making this a great option for those needing a nut-free, gluten-free, low carb recipe.

Easy Swaps and Variations
This recipe is incredibly flexible depending on your preferences or dietary needs:
Protein swaps:
- Ground turkey or chicken instead of pork sausage
- Add cooked bacon for extra flavor
Dairy-free option:
- Use dairy-free shredded cheese
- Swap sour cream with coconut cream
Flavor variations:
- Add bagel seasoning for a classic bagel flavor
- Try onion powder or everything seasoning
- Add jalapeños for heat

Midlife Macro Tips for This Recipe
This recipe is Midlife Macro Approved, meaning it fits into a fat-loss focused approach for women in perimenopause and menopause.
Here’s how to use it effectively:
- Pair with a side of leafy greens or cruciferous vegetables
- Add extra lean protein if needed to hit your daily goals
- Keep fat moderate (this recipe already supports that balance)
- Use as a meal prep breakfast to avoid skipping protein
Remember: protein is key for satiety, metabolism, and maintaining muscle as we age.

Air Fryer Option
Yes, you can make these in the air fryer.
- Use silicone molds or a safe bowl
- Cook at 325°F for about 12–15 minutes
- Add cheese at the end and cook a few more minutes
This gives you a slightly crispier exterior while keeping the inside soft and cheesy.

Storage and Reheating
- Store in the fridge up to 4 days
- Freeze for longer storage
- Reheat in microwave (30–60 seconds) or air fryer
These reheat beautifully and keep their texture.
New Here?
If you’re new to my content, here’s what you need to know:
I’ve been sharing sugar-free, low carb recipes since 2011, but my approach has evolved-especially for women in midlife.
What worked in our 20s and 30s doesn’t always work anymore.
That’s why I created my Midlife Macro Method, focusing on:
- High protein
- Moderate fat (not extreme keto)
- Low carb for blood sugar balance
- Sustainable fat loss without restriction
If you’re ready for more support:
- My Midlife Macro Meal Plans take the guesswork out of what to eat
- My coaching inside the Sugar Free Mom Tribe helps you stay consistent
- My best selling book, The 30 Day Sugar Elimination Diet has helped thousands of people lose weight and my new book Good, Better, Best walks you through a realistic approach to long-term success.
You don’t need to be perfect—you just need a plan that works for your life.

Low Carb Keto Cheddar Sausage Stuffed Bagels
Low Carb Cheddar Sausage Stuffed Bagels
Ingredients
- 12 eggs
- 1/3 cup sour cream
- 1/4 cup Ground Flaxseed
- 1/2 teaspoon sea salt
- 1 teaspoon baking powder
- 1/3 cup Coconut Flour
- 1 cup whey protein powder
- 1 cup shredded cheddar
- 1 teaspoon Italian seasonings
- 1 teaspoon garlic powder
- 8 ounces sweet Italian sausage casings removed, cooked, crumbled
Instructions
- Preheat oven to 350 degrees F.
- In a stand mixer blend the eggs and sour cream until combined.
- Whisk the flax, salt, baking powder, coconut flour and protein powder together in a bowl.
- Slowly pour dry mixture into wet in the mixer.
- Combine cheddar cheese with Italian seasonings and garlic powder in a small bowl.
- Stir in 1/2 of the cheddar cheese and seasoning mixture into the batter in the mixer.
- Grease 2 donut pans with olive oil cooking spray.
- Pour batter evenly into each.
- Spoon 1/2 of the cooked sausage crumbles into the batter of each.
- Sprinkle the rest of the cooked sausage crumbles over the top of each bagel .
- Bake for 20 minutes.
- Remove from oven and add the rest of the shredded cheese over each bagel.
- Bake another 5 minutes.
- Cool slightly then using a knife, loosen around the edges of each bagel and in the center.
- Enjoy warm or refrigerate and reheat for 30 seconds to a minute in the microwave.



Hi! I made these and substituted almond flour for the protein powder. They are delicious! So glad I found your website!
Thanks for coming back to share that! Glad you liked them!
Hi, Brenda…bet you hate all these questions about substitutions! I, too, am wondering about something in place of the sour cream? Thanks much!
If you need it dairy free try using coconut cream instead. But if you just don’t like sour cream try cream cheese. I’ve not made this with either sub so let me know if you do end up trying it.
Usually plain reg or Greek yogurt works too!
Could the protein powder be substituted for or omitted?
I wouldn’t leave out the protein powder, you could sub egg white protein powder with it.
This looks like a winner! I don’t have a donut pan, but do have a pan that makes 18 mini loaves. Do you suppose I could sub that?? I’ve been looking for ways to use this pan, and since we’re low carb/gluten free, this recipe would fit the bill. Thanks,
Sure that would work, maybe don’t fill them all the way up though, just half way up the sides of the loaves. Let me know how it goes!
Just thought I’d drop by to say I love your blog! We are a low carb family also, with a few of us having nut allergies, so most recipes are unsuitable for us. Not any more, thanks to you!! I don’t keep protein powder in the house, so any ideas what I could sub it with, that keeps it nut free?
I wonder if you could sub maybe ground flaxseed instead? I’ve not tried it, sorry!
This sounds so good! I have a question.
When you list protein powder, I have some but it is vanilla flavored as is the one you linked to, is that ok?
Yes vanilla can be used, I’m not sure if you will notice much vanilla flavor with the cheddar and sausage masking it.
I’m snowed I and don’t have a donut pan, could I use a mini bundt pan or would a muffin tin or something else work better? I’m just beginning my quest to low carb and I’ve been loving your sugar free recipes for more than a year now. Thank you so much!
12 eggs…is this a typo?
no that is correct. it’s the coconut flour, it’s needed.
Do you think egg whites could be substituted for half the eggs?
Ummmmm these are the kind of bagels I want every single morning. Normally when I eat a bagel I end up starving an hour later because my body needs more than just bread. This is the perfect balance of meat to carb goodness 🙂
Wow they look sooo perfect. They would be a great way to start my family’s weekend. I’ll make them this Sat 🙂
I want a hot breakfast in the mornings during the winter too. I mean I love smoothies but I love bagels even more haha Love all of the cheese and sausage in these!
I love this idea. The kids would go nuts for this. Plus it’s such a great recipe for a cold winter morning. There’s days we head to the barn in the morning and I just want a hot breakfast in my belly before we brave those temperatures. This is perfect.
Wow! These bagels look amazing. Saving the recipe to make this week.
Love this idea! I’m always on the lookout for hearty yet healthy breakfast options, so this sounds like it’s right up my alley… I bet it would be fun to play around with different combinations of cheese and breakfast meats, too. (Can you say bacon version? Yeesssssss.)
WOW! Ive never seen a bagel with cheese and sausage stuffed in side and low carb all at once, this is genius!
Brenda – what a genius idea – love this recipe! My donut pans clearly don’t get enough love until now with these amazing bagels!
As much as I love smoothies, I definitely want something warm on a cold winter morning so I’m totally with you on this! These stuffed bagels are a dream! I know my hubs would absolutely adore them so – bookmarking this!!
Wait. What? These look incredible! Oh how I wish I had one for breakfast right now. Plus, I need to get me one (or two) of those donut pans. *note to self*
This look insanely delicious, I’m loving that the filling is baked right into the bagel – yum!
Love love love your recipes. Thank you for what you are doing for me.
I am a type 2 diabetic choosing to control my disease with diet and supplements.
I have been very encouraged by you and a few other sites. What industrious people you all are with servant hearts.
I have referred many to your sites.
Thank you again for your example and encouragement. Due to your examples I am learning to convert many loved recipes.
Thanks so much!
This is such a great idea! I love the idea of making them ahead of time so I don’t have to worry about breakfast on those busy mornings!
I always want a hot breakfast in the winter – cold smoothies and/or cereal just don’t sound good to me! Love this idea!
Could you use chia seeds instead of flax seed?.
I’m not sure that chia can sub for flax. Maybe use almond meal instead of flax.
I love, love your site. This is a terrific recipe(just like all the rest of them)!! I can’t wait to make these bagels. Thanks for all your hard work.
thank you!
I just discovered your website and have been meaning to tell you how absolutely great it is! Thank you for working these recipes that are low sugar and low carb! We are striving toward both in our house. And these are so great! So thank you!!
Wondering in this recipe if there is a sub for the protein powder? Do you think Almond flour would work?
Thank you again so much!!! Your website is truly a blessing!
Yes I think almond flour would work but I haven’t tried it so if you do will you come back and let me know how it goes?
I made this recipe last night and I substituted ALMOND flour for coconut and it tastes AMAZING ?
I also made it in a 9X13 pan
Baked it for 30 minutes added the balance of the cheese and then another 5 minutes.
Definitely will make again.
Can protein powder be skipped?
What can I use instead?
More flaxmeal?
It will effect the texture without the protein powder and I’ve not swapped it with anything to test it out.